what are the Best accounting software to use with Shopify?

by Muhammad Ali

In this article we’re going to talk about shopify bookkeeping and stay on top of your bookkeeping. This is one of the most important parts of your business and a lot of people barely talk about this, probably because it’s not something that is enjoyable to do. But if you don’t manage your books properly it could be so easy for you to end up losing money. 

Like I said, bookkeeping is literally one of the most important aspects of your business. It’s not something that you do and immediately see a result out of it. But it’s one of those things that if you don’t do it, your entire business could crumble and fall beneath. If you’re not making good money yet, you stay on top of your bookkeeping from day one of starting your business.

Does shopify do bookkeeping?

As one of the biggest ecommerce and dropshipping platforms. Shopify itself does not provide bookkeeping services. Shopify has great built-in features to get you started, but their financial reporting has a few limitations. Not all Shopify reports are available to store owners on all plans. However, it provides integrations with different accounting software that can help you manage your finances more efficiently. These integrations sync your Shopify store data with accounting tools, automates bookkeeping tasks and provides you with accurate financial records.

Best accounting software to use with shopify

1. QuickBooks

  • Quickbooks has a connector app that allows you to integrate your Shopify store.
  • It enables you as a business owner to automatically import all Shopify orders and even refunds with just a click.
  • Monthly plans can be more expensive than other accounting software options.
  • Each plan allows only a limited number of account users.

2. Xero

  • The easiest way to integrate Shopify with Xero is by using the Xero app on Shopify. 
  • This software offers a free trial for 30 days.
  • Comprehensive reporting capabilities.
  • Unlimited uses for all plans.
  • Some advanced features may require additional add-ons, potentially increasing overall costs.
  • Payment processing may lag for certain transaction types.
  • No automatic reminders for unpaid invoices.

3. FreshBooks

  • Highly rated customer support, time-tracking, and mileage tracking features are included in all plans, wide range of cloud accounting features.
  • Limited number of users and clients, lowest-tier plans don’t offer bank reconciliation or accountant access, no quarterly tax estimates.

4. Wave

  • Completely free, double-entry accounting reports, unlimited users with control over user permissions, unlimited invoice creation with customizable templates.
  • No phone support; live chat only available for paid add-ons, no updates planned for current features, no advanced accounting options.


Bookkeeping is a backbone of every business. While we know Shopify doesn’t provide bookkeeping services, it seamlessly integrates with various accounting software like QuickBooks, Xero, FreshBooks, and Wave. Each software is good but not every tool is for you. Take your time to choose the best bookkeeping software that fulfills your business desires.

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